pyIPSA

pyIPSA (Integrative Pipeline for Splicing Analysis) is an alternative splicing analysis workflow.

• Introduction
• pyIPSA Workflow
  • Step 1: count
  • Step 2: aggregate
  • Step 3: annotate
  • Step 4: choose strand
  • Step 6: filter
• Installation
  • Download workflow
  • Requirements
  • Install requirements using pip
  • Installing on Arcuda
• Running
  • Configuration
• Output
  • J1 - Junction and Counts
  • J2 - Junctions and Aggregated Counts
  • J3 - Annotated Junctions
  • J4 - Choose Strand
  • J6 - Filter Junctions
  • Gather Junctions
  • S1 (PS1) - Sites and Counts
  • S2 (PS2) - Aggregate Sites
  • S6 (PS6) - Filter Sites
  • R (PR) - Rates
• Pipeline
  • Input
  • Outputs
  • Workflow
• Tools
  • Step 1
  • Step 2
  • Step 3
  • Step 4
  • Step 6
  • Step 7
  • Auxiliary