Installation

pyIPSA workflow consists of several tools written in Python. The workflow itself is based on the workflow management system snakemake.

Download workflow

To download pyIPSA just clone it from github repository:

$ git clone https://github.com/Leoberium/pyIPSA.git

But it won’t work if you don’t have all the required packages installed.

If you have Python environment with pip just move to directory with pyIPSA and run:

$ pip install --upgrade -r requirements.txt

Otherwise you need to install Python and pip firstly.

For Arcuda cluster users the installation is quite similar. Move to pyIPSA directory, load module with Python and install all required packages:

$ module load ScriptLang/python/3.8.3
$ pip3 install --user --upgrade -r requirements.txt